Lines Matching refs:scaffIndex
390 int *scaffIndex; member
5171 if (dtd->scaffIndex) { in doProlog()
5183 parser, dtd->scaffIndex, parser->m_groupSize * sizeof(int)); in doProlog()
5186 dtd->scaffIndex = new_scaff_index; in doProlog()
5202 assert(dtd->scaffIndex != NULL); in doProlog()
5203 dtd->scaffIndex[dtd->scaffLevel] = myindex; in doProlog()
5222 && (dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5224 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5368 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5434 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel]].quant = quant; in doProlog()
6582 p->scaffIndex = NULL; in dtdCreate()
6621 ms->free_fcn(p->scaffIndex); in dtdReset()
6622 p->scaffIndex = NULL; in dtdReset()
6657 ms->free_fcn(p->scaffIndex); in dtdDestroy()
6787 newDtd->scaffIndex = oldDtd->scaffIndex; in dtdCopy()
7279 if (! dtd->scaffIndex) { in nextScaffoldPart()
7280 dtd->scaffIndex = (int *)MALLOC(parser, parser->m_groupSize * sizeof(int)); in nextScaffoldPart()
7281 if (! dtd->scaffIndex) in nextScaffoldPart()
7283 dtd->scaffIndex[0] = 0; in nextScaffoldPart()
7321 = &dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]]; in nextScaffoldPart()